species:   Clros
pid:       PID1837
parent:    cro-mir-3
paralog:   
locus:     CADEHS020000005.2:590453-590538
matures:   ['UUAGCCUCGAGACUUUGCA', 'CAAAGUCUCGAGGCUGAG']
srr:       ERR5950791
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950791.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950791.cram CADEHS020000005.2:590453-590538

43 out of bounds
1288 alignments
1155 proper strand
894 stranded perfect matches

*******************                                              ******************** 
UUAGCCUCGAGACUUUGCAGGAUAUAUUCUUUUUCUUUUUCGCCGUAAAGAAAACAAAGCUAUCCGGCAAAGUCUCGAGGCUGAGC
((((((((((((((((((.(((((..((..((((((((........))))))))..))..))))).))))))))))))))))))..
UUAGCCUCGAGACUUUGCA------------------------------------------------------------------- l=19 a=401 c
-------------------------------------------------------------------CAAAGUCUCGAGGCUGAG- l=18 a=0 c*
UUAGCCUCGAGACUUUGCA------------------------------------------------------------------- l=19 a=401 ma
-------------------------------------------------------------------CAAAGUCUCGAGGCUGAG- l=18 a=0 ma*

UUAGCCUCGAGACUUU---------------------------------------------------------------------- l=16 a=1 
UUAGCCUCGAGACUUUG--------------------------------------------------------------------- l=17 a=1 
UUAGCCUCGAGACUUUGC-------------------------------------------------------------------- l=18 a=48 
UUAGCCUCGAGACUUUGCA------------------------------------------------------------------- l=19 a=401 (c,ma)
UUAGCCUCGAGACUUUGCc------------------------------------------------------------------- l=19 a=22 
UUAGCCUCGAGACUUUGaA------------------------------------------------------------------- l=19 a=1 
UUAGCCUCGAGACaUUGCA------------------------------------------------------------------- l=19 a=1 
UUAGCCUCGAGACUUUGCAG------------------------------------------------------------------ l=20 a=362 
UUAGCCUCGAGACUUUGCAa------------------------------------------------------------------ l=20 a=25 
UUAGCCUCGAGACUUUGCAc------------------------------------------------------------------ l=20 a=6 
UUAGCCUCGAGACUUUGCgG------------------------------------------------------------------ l=20 a=1 
UUAGCCUCGAGACUUUGCAu------------------------------------------------------------------ l=20 a=1 
UUAGCCUCGAGACUUUGCAGc----------------------------------------------------------------- l=21 a=29 
UUAGCCUCGAGACUUUGCAGa----------------------------------------------------------------- l=21 a=118 
UUAGCCUCGAGACUUUGCAGG----------------------------------------------------------------- l=21 a=13 
UUAGCCUCGAGACUUUGCAGaA---------------------------------------------------------------- l=22 a=47 
UUAGCCUCGAGACUUUGCAGGA---------------------------------------------------------------- l=22 a=5 
UUAGCCUCGAGACUUUGCAGGAa--------------------------------------------------------------- l=23 a=2 
UUAGCCUCGAGACUUUGCAGGAc--------------------------------------------------------------- l=23 a=5 
----CCUCGAGACUUUGCAGa----------------------------------------------------------------- l=17 a=2 
--------------------------------------------------------------UCCGGCAAAGUCUCGAGG------ l=18 a=1 
--------------------------------------------------------------UCCGGCAAAGUCUCGAGGC----- l=19 a=6 
--------------------------------------------------------------UCCGGCAAAGUCUCGAGGCU---- l=20 a=4 
----------------------------------------------------------------CGGCAAAGUCUCGAGGCU---- l=18 a=1 
----------------------------------------------------------------CGGCAAAGUCUCGAGGCUG--- l=19 a=2 
----------------------------------------------------------------CGGCAAAGUCUCGAGGCUGA-- l=20 a=2 
----------------------------------------------------------------CGGCAAAGUCUCGAGGCUGAc- l=21 a=1 
----------------------------------------------------------------CGGCAAAGUCUCGAGGCUGAGC l=22 a=45 
------------------------------------------------------------------GCAAAGUCUCGAGGCUGAGC l=20 a=2 

mb-01111
ax-1011001
ku-11
ss-101011111110
fn-111
